- Bangko Sentral ng Pilipinas [BSP]
- Bases Conversion and Development Authority
- Board of Liquidators
- Bureau of Agricultural Research
- Bureau of Agricultural Statistics
- Bureau of Broadcast Services (Philippine Broadcasting. Service)
- Bureau of Customs
- Bureau of Fisheries and Aquatic Resources [BFAR]
- Bureau of Food and Drugs [BFAD]
- Bureau of Immigration [BI]
- Bureau of Internal Revenue [BIR]
- Bureau of Postharvest Research and Extension [BPRE]
- Bureau of Soils and Water Management
- Career Executive Service Board
- Commission on Filipinos Overseas
- Commission on Higher Education [CHEd]
- Commission on Population
- Council for the Welfare of Children
- Cultural Center of the Philippines [CCP]
- Dangerous Drug Board
- Davao City Water District
- Energy Regulatory Commission [ERC]
- Environmental Management Bureau
- Foreign Service Institute
- Garments and Textile Export Board
- Government Service Insurance System [GSIS]
- Home Guaranty Corporation
- Housing and Land Use Regulatory Board
- Housing and Urban Development Coordinating Council [HUDCC]
- Information Technology and Electronic Commerce Council
- Institute for Labor Studies
- Insurance Commission
- Intellectual Property Office [IPO]
- Komisyon sa Wikang Filipino
- Land Transportation Franchising & Regulatory Board [LTFRB]
- Land Transportation Office [LTO]
- Light Rail Transit Authority [LRTA]
- Livelihood Corporation of the Republic of the Philippines
- Local Water Utilities Administration
- Maritime Industry Authority
- Maritime Training Council
- Metropolitan Manila Development Authority [MMDA]
- Mindanao Economic Development Council
- National Center for Mental Health
- National Commission on the Role of Filipino Women
- National Computer Center [NCC]
- National Council for the Welfare of Disabled Persons
- National Disaster Coordinating Council [NDCC]
- National Drug Law Enforcement and Prevention Coordinating Center (DEP Center)
- National Historical Institute
- National Kidney and Transplant Institute
- National Livelihood Support Fund
- National Police Commission [NPC]
- National Water Resources Board
- Overseas Workers Welfare Administration [OWWA]
- Philippine Carabao Center
- Philippine Coast Guard
- Philippine Deposit Insurance Corporation [PDIC]
- Philippine Economic Zone Authority [PEZA]
- Philippine Export-Import Credit Agency (a.k.a. Trade and Investment Development Corp.)
- Philippine Health Insurance Corporation
- Philippine Heart Center
- Philippine Institute for Development Studies
- Philippine International Convention Center [PICC]
- Philippine International Trading Corporation
- Philippine National Police [PNP]
- Philippine National Railways [PNR]
- Philippine Overseas Employment Administration [POE]
- Philippine Ports Authority
- Philippine Postal Corporation
- Philippine Postal Savings Bank, Inc.
- Philippine Racing Commission
- Philippine Rice Research Institution
- Philippine Science and Technology Portal
- Philippine Sports Commission [PSC]
- Professional Regulations Commission [PRC]
- Public Estates Authority [PEA]
- Securities and Exchange Commission [SEC]
- Social Security System [SSS]
- Southern Philippines Development Authority [SPDA]
- Technical Education and Skills Development Authority [TESDA]
- Technology and Livelihood Resource Center [TLRC]